Advice
The technologies
The technologies
Epidermal growth factor receptor (EGFR) mutation tests are in vitro diagnostic (IVD) tests used to help identify adults with non-small-cell lung cancer (NSCLC) suitable for treatment with EGFR tyrosine kinase inhibitors (EGFR‑TKIs). The presence of specific EGFR mutations show how effective treatment with EGFR‑TKIs will be. As a result, the test is useful for oncologists for deciding personalised treatment options.
EGFR mutations occur in EGFR exons 18–21 and mutations in exons 18, 19 and 21 and indicate suitability for treatment with EGFR‑TKIs. Mutations in exon 20 (with the exception of a few mutations) show the tumours are EGFR‑TKI resistant and not suitable for treatment with EGFR‑TKIs.
Traditionally, EGFR mutation testing is done on a tumour sample obtained by tissue biopsy. More recently, plasma EGFR mutation tests that use free circulating tumour DNA (ctDNA) have been developed as an alternative. ctDNA is made up of fragments of tumour DNA that have entered the bloodstream. Only a blood sample is needed for plasma testing, so it is sometimes called 'liquid biopsy'.
Plasma testing begins by using centrifugation to separate plasma from the other components of a blood sample. A DNA extraction kit is then applied to isolate ctDNA. Polymerase chain reaction (PCR) amplifies ctDNA in the sample. Depending on which test is done, EGFR mutations are detected by either analogue or digital methods. Analogue detection (known as real-time PCR) uses fluorescent markers that attach to specific mutation sites, making them detectable; fluorescence in the sample is detected as a whole. In digital PCR (dPCR) the sample is separated into many partitions, each tested individually, providing a lower threshold of detection. Fully quantitative plasma EGFR mutation tests can measure the levels of ctDNA in a sample; semi-quantitative tests display the results as above or below thresholds.
Further information on the kits assessed in this report is available in table 1.
Table 1 Summary of technologies
Manufacturer |
Technology |
Additional information |
AmoyDx |
EGFR 29 mutations detection kit |
|
SuperARMS EGFR mutation detection kit |
|
|
SuperARMS EGFR T790M mutation detection kit |
|
|
Bio-rad |
Droplet digital PCR Dx system |
|
Panagene |
PANAMutyper R EGFR |
|
Qiagen |
Therascreen EGFR plasma RGQ PCR kit |
|
Roche |
Cobas EGFR mutation test v2 |
|
Innovations
Plasma EGFR mutation tests do not need a biopsy to be taken and are a less invasive alternative to tissue EGFR mutation tests. They can provide testing in people who are unable to, or do not wish to, have a tissue biopsy and whose disease otherwise would remain untested. People may have a lack of available tumour tissue, low-quality tissue sample or poor health making a tissue biopsy infeasible; about 30% of biopsies are classified as 'failed' (PHG Foundation 2017). More than 25% of people with NSCLC in the UK do not have a pathological confirmation of their diagnosis (National Lung Cancer audit report 2016).
Introducing plasma EGFR mutation testing may lead to quicker test results and treatment changes as it removes the need for a tissue biopsy in certain circumstances.
Plasma EGFR mutation testing also avoids problems with tumour evolution and heterogeneity, when the presence of mutations may be missed in a biopsy of a single metastatic site or from using an existing sample. Plasma testing can be repeated easily, allowing for mutation monitoring in people having EGFR‑TKI therapy. This method can detect resistance mutations – predominantly T790M – which may need different treatment. Quantitative plasma EGFR mutation tests can measure the levels of ctDNA, which may be a good predictor of treatment response. This is still being researched and not in clinical use.
Current NHS pathway or current care pathway
The NICE clinical guideline on diagnosing and treating lung cancer recommends that people with suspected lung cancer should be referred urgently for a chest X‑ray. If the results suggest lung cancer, a contrast-enhanced computed tomography (CT) scan of the chest, upper abdomen and lower neck is done to evaluate the degree of mediastinal and chest wall invasion. Further investigations to confirm a diagnosis and to provide information on the stage of the disease are then done. These investigations generally include a biopsy taken from a central or peripheral lesion for histological confirmation and subtyping, but may also include positron emission tomography/CT (PET/CT), endobronchial ultrasound-guided transbronchial needle aspiration (EBUS‑TBNA), endoscopic ultrasound-guided fine needle aspiration or non-ultrasound-guided transbronchial needle aspiration. The tumour sample is used for EGFR mutation testing.
NICE recommends 5 tests that use samples of tumour tissue for identifying EGFR-TK mutations in adults with previously untreated locally advanced or metastatic non-small-cell lung cancer to identify people whose disease might benefit from treatment with EGFR‑TKIs. The guidance notes that tests and methods are evolving, so new ones are likely to appear in the future.
If an EGFR mutation is confirmed, EGFR‑TKIs recommended in NICE technology appraisal guidance such as afatinib, gefitinib or erlotinib can be offered as an alternative to chemotherapy.
If disease progression is seen after first‑line EGFR‑TKI therapy, a repeat biopsy can be done and tested for EGFR T790M resistance mutation. This can tell whether the tumour has become resistant to the first-line EGFR‑TKI, before considering second-line osimertinib, which is recommended as an option in NICE technology appraisal guidance. Testing for EGFR T790M resistance mutation is not routinely done in the NHS.
People who cannot have, or do not want, a tumour biopsy do not routinely have EGFR testing by other means (such as plasma EGFR testing or next-generation sequencing [NGS]) and usually have first-line chemotherapy with a single third-generation drug (docetaxel, gemcitabine, paclitaxel or vinorelbine) and a platinum drug (carboplatin or cisplatin). People who cannot tolerate a platinum combination may be offered single-agent chemotherapy with a third-generation drug.
Population, setting and intended user
Plasma EGFR testing would be used in adults with locally advanced or metastatic NSCLC in secondary or tertiary care settings. Their disease may either be untreated or relapsing after previous TKI therapy. A blood sample would be taken by a phlebotomist. Sample preparation and test procedures would be completed by pathology laboratory staff. The results are used to aid decision-making by clinicians and the patient.
Costs
Technology costs
The costs of the plasma EGFR mutation tests included in this briefing are listed in table 2.
Table 2 Cost of plasma EGFR mutation tests
Product/device |
Cost |
Additional information |
EGFR 29 (AmoyDx) |
||
Outpatient appointment (for bloods) |
£6.00 (PSSRU 2016) |
Assumed 1 visit to band‑3 phlebotomist lasting 15 minutes |
Blood collection tube |
£6.16 |
Based on the list price of PAXgene blood ccfDNA tubes |
AmoyDx EGFR 29 mutations detection kit |
£106.25 per test |
Including training |
DNA extraction kit |
£13.06 per test |
Based on list price of QIAamp circulating nucleic acid kit (Qiagen) |
Real-time PCR |
£38.83 per test |
Uplifted from Sewell et al. 2014 |
Total cost per test |
£170.30 |
|
SuperARMS EGFR mutation kit (AmoyDx) |
||
Outpatient appointment (for bloods) |
£6.00 (PSSRU 2016) |
Assumed 1 visit to band‑3 phlebotomist lasting 15 minutes |
Blood collection tube |
£6.16 |
Based on the list price of PAXgene blood ccfDNA tubes |
SuperARMS EGFR mutation detection kit |
£166.17 per test |
Including training |
DNA extraction kit |
£13.06 per test |
Based on list price of QIAamp circulating nucleic acid kit (Qiagen) |
Real-time PCR instrument |
£38.83 per test |
Uplifted from Sewell et al. 2014 |
Total cost per test |
£230.22 |
|
SuperARMS EGFR T790M mutation kit (AmoyDx) |
||
Outpatient appointment (for bloods) |
£6.00 (PSSRU 2016) |
Assumed 1 visit to band‑3 phlebotomist lasting 15 minutes |
Blood collection tube |
£6.16 |
Based on the list price of PAXgene blood ccfDNA tubes |
SuperARMS EGFR T790M mutation detection kit |
£74.00 per test |
Including training |
DNA extraction kit |
£13.06 per test |
Based on list price of QIAamp circulating nucleic acid kit (Qiagen) |
Real-time PCR instrument |
£38.83 per test |
Uplifted from Sewell et al. 2014 |
Total cost per test |
£138.05 |
|
Droplet Digital PCR Dx system (Bio-Rad) |
||
Outpatient appointment (for bloods) |
£6.00 (PSSRU 2016) |
Assumed 1 visit to band‑3 phlebotomist lasting 15 minutes |
Blood collection tube |
£6.16 |
Based on the list price of PAXgene Blood ccfDNA tubes |
QX200 AutoDG Droplet Digital PCR Dx system (including reader and DNA extraction kit), C1000 thermal cycler and PX1 plate sealer |
• If used by 1,000 patients: £131.30 per test • If used by 10,000 patients: £13.13 per test |
Including training |
Validated mutation assays |
£2.63 per reaction |
£525 for 200 reactions |
Consumables and reagents |
£12.40 per sample |
Based on a 2‑well sample at £6.20 per well |
Total cost per test |
|
|
PANAMutyper R EGFR (Panagene) |
||
Outpatient appointment (for bloods) |
£6.00 (PSSRU 2016) |
Assumed 1 visit to band‑3 phlebotomist lasting 15 minutes |
Blood collection tube |
£6.16 |
Based on the list price of PAXgene blood ccfDNA tubes |
PANAMutyper R EGFR |
£77.59 per test |
Reagent price, including training |
DNA extraction kit |
£13.06 per test |
Based on list price of QIAamp circulating nucleic acid kit (Qiagen) |
Real-time PCR instrument |
£38.83 per test |
Uplifted from Sewell et al. 2014 |
Total cost per test |
£141.64 |
|
Therascreen EGFR plasma RGQ PCR kit (Qiagen) |
||
Outpatient appointment (for bloods) |
£6.00 (PSSRU 2016) |
Assumed 1 visit to band‑3 phlebotomist lasting 15 minutes |
Blood collection tube |
£6.16 |
Based on the list price of PAXgene blood ccfDNA tubes |
Therascreen EGFR Plasma RGQ PCR kit |
£112.79 per test |
Including training |
DNA extraction kit |
£13.06 per test |
Based on list price of QIAamp circulating nucleic acid kit (Qiagen) |
Real-time PCR instrument |
£38.83 per test |
Uplifted from Sewell et al. 2014 |
Total cost per test |
£176.84 |
|
Cobas EGFR mutation test v2 (Roche) |
||
Outpatient appointment (for bloods) |
£6.00 (PSSRU 2016) |
Assumed 1 visit to band‑3 phlebotomist lasting 15 minutes |
Blood collection tube |
£6.16 |
Based on the list price of PAXgene blood ccfDNA tubes |
Cobas EGFR mutation test |
£125.00 per test |
Including training and consumables |
DNA extraction kit |
£13.06 per test |
Based on list price of QIAamp circulating nucleic acid kit (Qiagen) |
Real-time PCR instrument |
£38.83 per test |
Uplifted from Sewell et al. 2014 |
Total cost per test |
£189.05 |
|
Abbreviation: ccf, circulating cell free. |
Costs of standard care
Standard clinical practice in England is EGFR mutation testing based on samples of tumour tissue gathered from EBUS‑TBNA, CT‑guided biopsy or resection.
The cost of standard care ranges from £145.12 to £1,610.26 per test. Costs are outlined in table 3.
A range of diagnostic methods may be used, alongside clinical examination, to identify acquired EGFR‑TKI resistance. Clinical progression of disease can be identified by symptoms, radiology, or by further tissue or liquid biopsy mutation analysis. For mutation analysis, the unit cost charged by a sample of NHS laboratories in the costing statement for NICE's diagnostics guidance on EGFR-TK mutation testing ranges from £130 to £155, including reporting results (August 2013).
Table 3 Cost of standard care
Product/device |
Cost |
Additional information |
Tissue biopsy |
|
The cost of tissue biopsy is only applicable when there is no readily available tissue sample. For biopsy of paratracheal and peribronchial intraparenchymal lung lesions, EBUS‑TBNA is used as the standard care. Otherwise, CT‑guided biopsy is the standard care. The cost was uplifted to 2015/16 prices using PSSRU 2016. |
Standard EGFR mutation testing |
£145.12 (NICE 2013) |
The cost listed is the average cost of 5 EGFR mutation tests recommended by NICE (NICE 2013):
The cost was uplifted to 2015/16 prices using PSSRU 2016. |
Total cost per test |
|
|
Abbreviations: CT, computed tomography; EBUS‑TBNA, endobronchial ultrasound-guided transbronchial needle aspiration; EGFR, epidermal growth factor receptor; PCR, polymerase chain reaction. |
Resource consequences
The costs of plasma EGFR mutation tests assessed in this briefing are similar to the costs of tissue EGFR mutation tests. However, tissue EGFR mutation tests are based on samples of tumour tissue gathered during biopsy or resection. If there is no readily available tumour tissue, biopsy will be needed to collect tumour tissue. EGFR mutation tests may be cost effective if they reduce the need for tissue biopsy. There is no published evidence on the resource consequences of adopting plasma EGFR mutation tests for patients with NSCLC.
The resource impact statement for NICE's technology appraisal guidance on osimertinib estimates that about 400 people per year whose cancer has the T790M mutation will see their disease progress after first-line treatment with an EGFR‑TKI. If a person's disease progresses after first-line EGFR‑TKI therapy, a positive SuperARMS EGFR T790M liquid biopsy test would indicate suitability for osimertinib therapy, in line with NICE's technology appraisal guidance on osimertinib. Training is needed in the use of all plasma EGFR mutation tests assessed in this briefing; this is standard for implementing any new test and is included in the purchase price for each test.
At the time of writing, Cobas EGFR mutation test is used by 7 NHS hospitals. QX200 AutoDG Droplet Digital PCR Dx system is used by 2 NHS hospitals, and AmoyDx EGFR29 mutation detection kit is used by 1 NHS hospital. None of the other EGFR tests are used routinely in the UK.